CDS

Accession Number TCMCG051C37375
gbkey CDS
Protein Id XP_006375953.2
Location join(5836814..5837017,5837111..5837213,5837312..5837388,5837493..5837678,5837766..5837885,5837977..5838039,5838148..5838291,5838796..5838960,5840973..5841050,5842808..5842885,5844368..5844520,5844639..5844707,5844797..5844892,5845369..5845439,5846173..5846301,5846383..5846459,5846555..5846595,5846727..5846801,5847364..5847518,5848395..5848499,5848585..5848660,5848788..5848864,5849043..5850396)
Gene LOC18104156
GeneID 18104156
Organism Populus trichocarpa

Protein

Length 1231aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_006375891.2
Definition 5'-3' exoribonuclease 4 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category AL
Description 5'-3' exoribonuclease
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
ko03016        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K12619        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03008        [VIEW IN KEGG]
ko03018        [VIEW IN KEGG]
map03008        [VIEW IN KEGG]
map03018        [VIEW IN KEGG]
GOs GO:0000966        [VIEW IN EMBL-EBI]
GO:0000967        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004527        [VIEW IN EMBL-EBI]
GO:0004532        [VIEW IN EMBL-EBI]
GO:0004534        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008409        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010586        [VIEW IN EMBL-EBI]
GO:0010587        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0016075        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016796        [VIEW IN EMBL-EBI]
GO:0016896        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034471        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0034661        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043632        [VIEW IN EMBL-EBI]
GO:0043633        [VIEW IN EMBL-EBI]
GO:0043634        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0060147        [VIEW IN EMBL-EBI]
GO:0060149        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0060968        [VIEW IN EMBL-EBI]
GO:0060969        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0071025        [VIEW IN EMBL-EBI]
GO:0071027        [VIEW IN EMBL-EBI]
GO:0071029        [VIEW IN EMBL-EBI]
GO:0071035        [VIEW IN EMBL-EBI]
GO:0071046        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090503        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGGAATACCAGCATTCTATAGATGGTTAACGGAGAAGTATCCGCTTATAACTGCCGACGTCATGGAAGAAACGCCGCTTTTAATCAACGGCGTTTCTGTCCCACTCGACACTTCCTGCCCTAACCCTAACGGTATCGAGTTCGACAATCTCTATCTTGACATGAATGGAATCATTCACCCTTGTTTCCATCCCGAAGGACTGCCGCCTCCGACTACATACGAGGAGGTTTTCGCTGCGGTTTTCAAGTACATTGATAGGATCTTCTCCATTGTCAGGCCTCGAAAACTCCTTTTCATGGCTATTGATGGTGTTGCTCCACGAGCTAAGATGAATCAGCAGCGGTCGAGGCGTTTTAGGGCTGCTAGAGATGCTGCTGATCAAGCCTTATCTATAGAGACGGATGGTGGGATTGTCCCTGAATCAGAAGAAGGGAACTTGGAGCAGGTGAAGAAACTTGACTCGAATGTAATTACACCTGGAACTGAGTTTATGGATTTGTTGTCGTCAGCTCTTCATTATTACATACGCTTGAGGATGAAAGAGGATTTGGGATGGCGAGGAATAAAGGTCATTCTTTCTGATGCTAATGTGGCCGGTGAAGGAGAGCATAAGATAATGTCATACATCCGCTTGCAAAGGAATCTACCGGGTTTTGATCCAAATACACGGCATTGTTTATATGGATTGGATGCGGATTTGATTATGCTCGCGTTGGCTTCTCATGAAATTCATTTCTCGATTCTAAGAGAGGATCTTGGAAATGCAAGCACAGGCGGTAAATCTTCGAAAGAAAAACATAGACTAATGAAGCGCCGAAAATTAAATGGGGATTCAGATCAAGTAGGAAAGTTTGCTGAGAATATAGAAAACCATATTTCGGGGATGAAGTTTCAGTTTCTCAATGTTTGGATCTTGAGGGAGTATTTAGCATATGATTTGAGAATACCAGACACAACATTGAAAGTAGACCTGGAGCGTGTGATTGATGATTTTGTCTTCATGTGTTTGTTTGTTGGAAATGATTTTCTGCCACACATACCATCACTGGAGATATCCGAGGGGGCTATCGATTTGCTCATGACAGTTTACAAAAAGGAATTTGCTCAGATGGGTGGTTACCTAACAAATTCTTTTGAGATAAACCTGATTCGTGTGGAGCACTTTGTACAAGCTCTAGGTTCTCATGAAAGCGCAATCTTCAGAAGACGCAACCAGATGCAAAAAGAGAGAGAGATACGTTTCCAACGCATATCAAAACGTCAGCAAGCATTTCATTCATCAAAATCATTGTTTGATGATGGTGTATCTGAAAGTTCCAAATCTTCTGTGAAGCTGGAAACGGCCCCTCTTGGTCAAAATCGACAAAATCCCCGAAGCGTGGCCATTAAGGAATCAAATCACTTCTCCTCCAATGGCACAAGTGCTGTAGTTGACAAGATTAAATTGGGAGATGAGGGTTGGAAGGAAAGATACTATGCAGAAAAGTTTGAGGCAAAGAGTGAAGATGAGCGTGATACCATTAGGAGACATGCGGTTTTCAAATATGTAGAAGGGATTTGTTGGGTCATGCGTTACTACTATGAAGGAGTCTGCTCCTGGCAATGGTTCTACCCTTATCATTATGCACCATTTGCCTCGGATTTCTATGGTTGTGATCAGTTAGAAATTCACTTCACACTTGGGGAACCTTTCAAGCCATTTGATCAATTAATGGCAGTGTTGCCTGCTGCGAGTGCACATGCTCTTCCTTTGTTTTACAGGAAATTGATGATAGATGCATCATCACCAATATTGGATTTTTACCCTACTGATTTTGAGCTTGATAATAATGGGAAACGTTTTTCCTGGCAGGCTATTTGCAAATTACCATTCATCGAAGAGTCCCGCCTTGTTTCAGAGATCACAAAAGTGGAGCACACATTGACAGATGAGGAGAGACGGAGAAACCGTTTGGGTTATGATGTCCTGTGTGTTCATGTTTCACATCCTTTGGCAGTTAAGGTAATTTCTCTGTTCGAGTGCAAAGATCAGTCAGCTCTGCCAACAGCTAATGGCAAATTGAAAATTGACCCAAAAATCAGTGGTGGAATGAATGGATACATTTACATTTCTGAGAAACCTGAATGGCCTCTCGGGATATTTTCACCAATTGATGGCATGCTGATGATAGCGAGTGAACAAGTGATATCAGTGTTCTATGAATACCCTCCATTTCATTCTCATATTCCAAGGCTACCAGAAGGAGTTATCTTGCCTAACAAGTCTGTGACCAAGTGCAATATTTTGCATGCACATCATTTATGGCATGAGCCAGCTATTCCTTCTATATCTTCTAAAAGACAAATCCCCAAGTCTATCTCAGGCCCTCAACTGGCAGAATTGGCTCATCGACTTGTGTCAGAATATAGTTCTTCAAAGCACCTGGACTTCAACAGATGTGCTGAACGTGGGTTACCTCTGGATGCTGCTAGAATGGGAGAAATGAGAACACAAGTCCAGCCCAAGAAAAGGAAACGAGGTAAACGCAATAAAAACTGCCTTGATGGAAGATCTAAAGAAAGTCAAGTGGGTAAAGGTGATTTTGTCCCTATCAACAATGTCAAGAATATGGAGAGTTCTACTCCCAGGCAACAGGGGGAAAGCTGTGGTGGTTATGGCAGTGCTGGAGTGGATGAAATTAAAATAGAAAAATCTAAAAAGAGGAAAAGGAGTTCTAAGAACAGAAAACGTAAGGAAGGTGCGGAAGGTGCTGGTATACCCGATGGTGTTCAGAAGCTGGAAATAAGCATTCAAGAGCAGAGAAACAGTGATCATACTTCTGGAGGTGCAGATGGAGAAAATGATTACAAAGAAGAAAAATCTAGGAAAAGAAAATCCAGAAAAAGAAATAAGAAAGGGAATCAGAATGATGGTGATGCTGTCCAAAACAAAAATGCTGAGAAATTGGGTTGCTGTAACCACCACATCAGCGAACTACAAAGTTGCATTCTTCAGGAGCGGAGCGGAGGGGATGTTCATGCAGGTGGAGATGTGGCATTGGAGTTGAAAACAGAGGTGGAATCCAAGAAAAGGAGAAAGATCGAAGCTGATGGCTTCCTAATTAACAATGTTGAAAAATTGGAGAGTTGTTTTCTCATGGGACAAAGAGGACGTGACAGTAACCACACAAATGCTGATGGATTGGACGCAACCAGTAACCCTGTCCCAAATAACAATCATCAGGAATTGGAGGATGGGGCATTGGAATTGAAAAAGGAGTTGAAATCCAAGAAAAAGAAACGAAGATCTAAGAAAAGGAGAAAGATTGAAGCTGATGGCGTCTTAATTAACAATGTTGAAAAATTGGGGAGTTCTCCCATGGAACAAAGAGGAGGTGACAGTAAACTCACAAATGCTGATGGATTGGACCCAACCAGATGCACTGTCTCTAATAAAATCAATCAGGAATTGGAGGGTTCTGGTCTTCAGGAACAGATAGAACACTTTGACCATTCAGGTGCAAACGAGGTGGACATAAAACCAGAAGTCAAATCCAAAAGGAAGAAACGGAGGTCTAAGAAAAAGCGGCAGATAGAGCTTATTGTCCCACCTAATGATCCTCCAGACTCGCAGTCTGGTCTTCCTGGAAAACAGGGAACTTTTGACAGCAACCATATAGGTGTGGGTGGGTTGGAAATGAAAACAGAAGTCTAA
Protein:  
MGIPAFYRWLTEKYPLITADVMEETPLLINGVSVPLDTSCPNPNGIEFDNLYLDMNGIIHPCFHPEGLPPPTTYEEVFAAVFKYIDRIFSIVRPRKLLFMAIDGVAPRAKMNQQRSRRFRAARDAADQALSIETDGGIVPESEEGNLEQVKKLDSNVITPGTEFMDLLSSALHYYIRLRMKEDLGWRGIKVILSDANVAGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALASHEIHFSILREDLGNASTGGKSSKEKHRLMKRRKLNGDSDQVGKFAENIENHISGMKFQFLNVWILREYLAYDLRIPDTTLKVDLERVIDDFVFMCLFVGNDFLPHIPSLEISEGAIDLLMTVYKKEFAQMGGYLTNSFEINLIRVEHFVQALGSHESAIFRRRNQMQKEREIRFQRISKRQQAFHSSKSLFDDGVSESSKSSVKLETAPLGQNRQNPRSVAIKESNHFSSNGTSAVVDKIKLGDEGWKERYYAEKFEAKSEDERDTIRRHAVFKYVEGICWVMRYYYEGVCSWQWFYPYHYAPFASDFYGCDQLEIHFTLGEPFKPFDQLMAVLPAASAHALPLFYRKLMIDASSPILDFYPTDFELDNNGKRFSWQAICKLPFIEESRLVSEITKVEHTLTDEERRRNRLGYDVLCVHVSHPLAVKVISLFECKDQSALPTANGKLKIDPKISGGMNGYIYISEKPEWPLGIFSPIDGMLMIASEQVISVFYEYPPFHSHIPRLPEGVILPNKSVTKCNILHAHHLWHEPAIPSISSKRQIPKSISGPQLAELAHRLVSEYSSSKHLDFNRCAERGLPLDAARMGEMRTQVQPKKRKRGKRNKNCLDGRSKESQVGKGDFVPINNVKNMESSTPRQQGESCGGYGSAGVDEIKIEKSKKRKRSSKNRKRKEGAEGAGIPDGVQKLEISIQEQRNSDHTSGGADGENDYKEEKSRKRKSRKRNKKGNQNDGDAVQNKNAEKLGCCNHHISELQSCILQERSGGDVHAGGDVALELKTEVESKKRRKIEADGFLINNVEKLESCFLMGQRGRDSNHTNADGLDATSNPVPNNNHQELEDGALELKKELKSKKKKRRSKKRRKIEADGVLINNVEKLGSSPMEQRGGDSKLTNADGLDPTRCTVSNKINQELEGSGLQEQIEHFDHSGANEVDIKPEVKSKRKKRRSKKKRQIELIVPPNDPPDSQSGLPGKQGTFDSNHIGVGGLEMKTEV